Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 PDPK2P-202ENST00000562415 1191 ntBASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 AC010654.1-201ENST00000615722 808 ntBASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 AP000974.1-201ENST00000623909 2387 ntBASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTFDC1Q9BY42 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 KLF4P1-201ENST00000412782 1185 ntBASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 AC096734.2-201ENST00000562054 433 ntBASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTFDC1Q9BY42 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 CEND1P1-201ENST00000451006 455 ntBASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 AL031432.2-201ENST00000566714 459 ntBASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 AL928711.1-201ENST00000570165 459 ntBASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.52■■□□□ 1.04
RTFDC1Q9BY42 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.52■■□□□ 1.03
RTFDC1Q9BY42 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.52■■□□□ 1.03
RTFDC1Q9BY42 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
RTFDC1Q9BY42 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 RHOQP3-201ENST00000437982 621 ntBASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 POLD4-207ENST00000531239 584 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.51■■□□□ 1.03
RTFDC1Q9BY42 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms