Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FZD10-202ENST00000539839 3282 ntBASIC17.73■□□□□ 0.43
VPS35Q96QK1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 AC104819.1-201ENST00000504587 486 ntBASIC17.72■□□□□ 0.43
VPS35Q96QK1 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 AL138831.2-201ENST00000606564 490 ntBASIC17.72■□□□□ 0.43
VPS35Q96QK1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VPS35Q96QK1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS35Q96QK1 AC125634.1-201ENST00000438758 1403 ntBASIC17.72■□□□□ 0.43
VPS35Q96QK1 AC097374.2-201ENST00000618617 1306 ntBASIC17.72■□□□□ 0.43
VPS35Q96QK1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.71■□□□□ 0.43
VPS35Q96QK1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 SLC25A6P5-201ENST00000435663 894 ntBASIC17.71■□□□□ 0.43
VPS35Q96QK1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AC074051.2-201ENST00000565115 352 ntBASIC17.71■□□□□ 0.43
VPS35Q96QK1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AC116407.2-201ENST00000613639 860 ntBASIC17.71■□□□□ 0.43
VPS35Q96QK1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS35Q96QK1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS35Q96QK1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS35Q96QK1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS35Q96QK1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS35Q96QK1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
VPS35Q96QK1 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VPS35Q96QK1 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AC096633.1-201ENST00000422446 749 ntBASIC17.7■□□□□ 0.42
VPS35Q96QK1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms