Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AL355312.1-201ENST00000407115 2176 ntBASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC090340.1-201ENST00000620778 4980 ntBASIC13.81□□□□□ -0.2
CCDC140Q96MF4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 BX276092.5-203ENST00000456199 560 ntBASIC13.81□□□□□ -0.2
CCDC140Q96MF4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC124864.1-201ENST00000623408 392 ntBASIC13.81□□□□□ -0.2
CCDC140Q96MF4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC016734.2-201ENST00000624325 1377 ntBASIC13.81□□□□□ -0.2
CCDC140Q96MF4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC140Q96MF4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AL845331.1-201ENST00000424978 1190 ntBASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 CHCHD2P8-201ENST00000429873 447 ntBASIC13.8□□□□□ -0.2
CCDC140Q96MF4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 IGHV3-41-201ENST00000613121 348 ntBASIC13.8□□□□□ -0.2
CCDC140Q96MF4 AL358472.4-201ENST00000633140 710 ntBASIC13.8□□□□□ -0.2
CCDC140Q96MF4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC140Q96MF4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC140Q96MF4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms