Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ANO7L1-203ENST00000602586 1720 ntBASIC17.13■□□□□ 0.33
VMP1Q96GC9 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 HLA-F-220ENST00000434407 884 ntBASIC17.13■□□□□ 0.33
VMP1Q96GC9 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 AL358472.4-201ENST00000633140 710 ntBASIC17.13■□□□□ 0.33
VMP1Q96GC9 AP000550.4-202ENST00000639755 178 ntBASIC17.13■□□□□ 0.33
VMP1Q96GC9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 MYLKP1-201ENST00000509077 1580 ntBASIC17.13■□□□□ 0.33
VMP1Q96GC9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 MIR149-201ENST00000384879 89 ntBASIC17.12■□□□□ 0.33
VMP1Q96GC9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PCED1CP-201ENST00000419887 785 ntBASIC17.12■□□□□ 0.33
VMP1Q96GC9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 AC005332.1-201ENST00000577698 1310 ntBASIC17.12■□□□□ 0.33
VMP1Q96GC9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VMP1Q96GC9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
VMP1Q96GC9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.11■□□□□ 0.33
VMP1Q96GC9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VMP1Q96GC9 IER3-202ENST00000376377 1350 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms