Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 AC112482.1-201ENST00000492080 688 ntBASIC17.84■□□□□ 0.45
HMGB4Q8WW32 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.83■□□□□ 0.45
HMGB4Q8WW32 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 AC002347.1-201ENST00000569543 541 ntBASIC17.83■□□□□ 0.44
HMGB4Q8WW32 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 AD001527.2-201ENST00000622994 785 ntBASIC17.83■□□□□ 0.44
HMGB4Q8WW32 AC073592.4-201ENST00000623827 446 ntBASIC17.83■□□□□ 0.44
HMGB4Q8WW32 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 PHGDH-209ENST00000641074 1780 ntBASIC17.83■□□□□ 0.44
HMGB4Q8WW32 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGB4Q8WW32 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 SPDYE21P-201ENST00000413323 827 ntBASIC17.82■□□□□ 0.44
HMGB4Q8WW32 KRT18P27-201ENST00000427733 1299 ntBASIC17.82■□□□□ 0.44
HMGB4Q8WW32 AC108751.1-201ENST00000490852 363 ntBASIC17.82■□□□□ 0.44
HMGB4Q8WW32 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 AC073592.5-201ENST00000624854 528 ntBASIC17.82■□□□□ 0.44
HMGB4Q8WW32 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGB4Q8WW32 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms