Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 AC093010.1-201ENST00000473625 1624 ntBASIC18.6■□□□□ 0.57
RFWD3Q6PCD5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 NSUN5P1-202ENST00000421140 1535 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 NSUN5P2-203ENST00000457352 1529 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 KRT18P65-201ENST00000439811 1286 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 NUS1P1-201ENST00000446295 882 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 AL121894.2-201ENST00000602977 491 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 AL732292.2-201ENST00000609649 430 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 AL353801.3-201ENST00000609898 542 ntBASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RFWD3Q6PCD5 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
RFWD3Q6PCD5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 AC246785.2-201ENST00000432512 513 ntBASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
RFWD3Q6PCD5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 MINOS1P3-201ENST00000457048 203 ntBASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 UNC93B7-201ENST00000509439 705 ntBASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.57■□□□□ 0.56
RFWD3Q6PCD5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms