Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 SNORA78-201ENST00000459373 127 ntBASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LRIF1Q5T3J3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
LRIF1Q5T3J3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
LRIF1Q5T3J3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.29
LRIF1Q5T3J3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
LRIF1Q5T3J3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 AP000523.1-201ENST00000398242 1049 ntBASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 NAPSB-206ENST00000562112 1266 ntBASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 NKILA-202ENST00000614771 2598 ntBASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LRIF1Q5T3J3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 HTR7P1-202ENST00000624664 4411 ntBASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LRIF1Q5T3J3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 AC084018.2-201ENST00000613093 2607 ntBASIC16.81■□□□□ 0.28
LRIF1Q5T3J3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms