Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 RCN1P2-201ENST00000398357 915 ntBASIC17.14■□□□□ 0.33
COL28A1Q2UY09 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL28A1Q2UY09 HEIH-201ENST00000623091 1652 ntBASIC17.13■□□□□ 0.33
COL28A1Q2UY09 KRT8P7-201ENST00000533003 1432 ntBASIC17.13■□□□□ 0.33
COL28A1Q2UY09 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 OR7E14P-202ENST00000530490 1290 ntBASIC17.13■□□□□ 0.33
COL28A1Q2UY09 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 SPCS2P1-201ENST00000561636 679 ntBASIC17.13■□□□□ 0.33
COL28A1Q2UY09 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 AC068587.9-201ENST00000641814 219 ntBASIC17.13■□□□□ 0.33
COL28A1Q2UY09 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.13■□□□□ 0.33
COL28A1Q2UY09 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL28A1Q2UY09 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms