Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIM2P55344 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIM2P55344 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.95■□□□□ 0.3
LIM2P55344 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIM2P55344 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
LIM2P55344 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIM2P55344 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIM2P55344 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 AP002383.4-201ENST00000442518 975 ntBASIC16.94■□□□□ 0.3
LIM2P55344 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.94■□□□□ 0.3
LIM2P55344 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.94■□□□□ 0.3
LIM2P55344 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LIM2P55344 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIM2P55344 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LIM2P55344 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LIM2P55344 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 KRT8P47-201ENST00000604727 1398 ntBASIC16.93■□□□□ 0.3
LIM2P55344 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.93■□□□□ 0.3
LIM2P55344 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LIM2P55344 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LIM2P55344 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 KRT18P1-202ENST00000452408 1331 ntBASIC16.93■□□□□ 0.3
LIM2P55344 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.93■□□□□ 0.3
LIM2P55344 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.93■□□□□ 0.3
LIM2P55344 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIM2P55344 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LIM2P55344 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
LIM2P55344 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LIM2P55344 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LIM2P55344 AL845331.1-201ENST00000424978 1190 ntBASIC16.92■□□□□ 0.3
LIM2P55344 UPK3BP1-201ENST00000428678 509 ntBASIC16.92■□□□□ 0.3
LIM2P55344 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.92■□□□□ 0.3
LIM2P55344 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIM2P55344 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LIM2P55344 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.92■□□□□ 0.3
LIM2P55344 AP002414.4-201ENST00000589764 1148 ntBASIC16.92■□□□□ 0.3
LIM2P55344 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.92■□□□□ 0.3
LIM2P55344 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms