Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGCS2P54868 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HMGCS2P54868 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGCS2P54868 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 SLC25A24-204ENST00000569674 2357 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGCS2P54868 CRYGEP-201ENST00000412192 528 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
HMGCS2P54868 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGCS2P54868 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGCS2P54868 MIR4751-201ENST00000578027 74 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGCS2P54868 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGCS2P54868 AC092865.6-201ENST00000642101 219 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 NCF1C-201ENST00000438382 1427 ntBASIC20.5■□□□□ 0.87
HMGCS2P54868 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGCS2P54868 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGCS2P54868 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGCS2P54868 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGCS2P54868 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGCS2P54868 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGCS2P54868 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGCS2P54868 AC018845.2-201ENST00000568326 409 ntBASIC20.49■□□□□ 0.87
HMGCS2P54868 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGCS2P54868 AL596442.2-201ENST00000610240 980 ntBASIC20.49■□□□□ 0.87
HMGCS2P54868 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGCS2P54868 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGCS2P54868 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGCS2P54868 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGCS2P54868 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HMGCS2P54868 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGCS2P54868 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.48■□□□□ 0.87
HMGCS2P54868 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 ALG1L5P-201ENST00000482043 771 ntBASIC20.48■□□□□ 0.87
HMGCS2P54868 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.48■□□□□ 0.87
HMGCS2P54868 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.48■□□□□ 0.87
HMGCS2P54868 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.48■□□□□ 0.87
HMGCS2P54868 AC019129.2-201ENST00000609837 1235 ntBASIC20.48■□□□□ 0.87
HMGCS2P54868 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.48■□□□□ 0.87
HMGCS2P54868 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGCS2P54868 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGCS2P54868 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms