Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CXCL12P48061 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 AC244107.1-201ENST00000442033 332 ntBASIC17.68■□□□□ 0.42
CXCL12P48061 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.68■□□□□ 0.42
CXCL12P48061 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.68■□□□□ 0.42
CXCL12P48061 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.68■□□□□ 0.42
CXCL12P48061 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.68■□□□□ 0.42
CXCL12P48061 AC004835.2-201ENST00000603762 682 ntBASIC17.68■□□□□ 0.42
CXCL12P48061 AL096865.1-201ENST00000606796 927 ntBASIC17.68■□□□□ 0.42
CXCL12P48061 AC007064.4-201ENST00000637740 555 ntBASIC17.68■□□□□ 0.42
CXCL12P48061 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.68■□□□□ 0.42
CXCL12P48061 AFG3L1P-217ENST00000557444 2447 ntBASIC17.68■□□□□ 0.42
CXCL12P48061 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL12P48061 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL12P48061 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CXCL12P48061 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 AC025580.3-201ENST00000617932 1424 ntBASIC17.67■□□□□ 0.42
CXCL12P48061 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CXCL12P48061 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 AL139400.1-201ENST00000366220 510 ntBASIC17.67■□□□□ 0.42
CXCL12P48061 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 RHOQP3-201ENST00000437982 621 ntBASIC17.67■□□□□ 0.42
CXCL12P48061 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.67■□□□□ 0.42
CXCL12P48061 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.67■□□□□ 0.42
CXCL12P48061 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
CXCL12P48061 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.67■□□□□ 0.42
CXCL12P48061 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CXCL12P48061 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL12P48061 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.67■□□□□ 0.42
CXCL12P48061 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL12P48061 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CXCL12P48061 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.66■□□□□ 0.42
CXCL12P48061 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.66■□□□□ 0.42
CXCL12P48061 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.66■□□□□ 0.42
CXCL12P48061 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 BCRP1-201ENST00000444246 691 ntBASIC17.66■□□□□ 0.42
CXCL12P48061 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.66■□□□□ 0.42
CXCL12P48061 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.66■□□□□ 0.42
CXCL12P48061 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.66■□□□□ 0.42
CXCL12P48061 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.66■□□□□ 0.42
CXCL12P48061 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CXCL12P48061 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.66■□□□□ 0.42
CXCL12P48061 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL12P48061 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL12P48061 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms