Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PTPN9P43378 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN9P43378 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 AC133963.1-201ENST00000504166 1679 ntBASIC18.54■□□□□ 0.56
PTPN9P43378 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN9P43378 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.54■□□□□ 0.56
PTPN9P43378 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 VENTXP7-201ENST00000475503 772 ntBASIC18.54■□□□□ 0.56
PTPN9P43378 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN9P43378 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.54■□□□□ 0.56
PTPN9P43378 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.54■□□□□ 0.56
PTPN9P43378 NPAP1P7-201ENST00000613027 823 ntBASIC18.54■□□□□ 0.56
PTPN9P43378 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.54■□□□□ 0.56
PTPN9P43378 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PTPN9P43378 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN9P43378 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PTPN9P43378 PCDHB18P-201ENST00000524813 2368 ntBASIC18.54■□□□□ 0.56
PTPN9P43378 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.54■□□□□ 0.56
PTPN9P43378 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTPN9P43378 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.53■□□□□ 0.56
PTPN9P43378 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTPN9P43378 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.53■□□□□ 0.56
PTPN9P43378 AC010460.3-201ENST00000511359 1579 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.53■□□□□ 0.56
PTPN9P43378 MIR3180-1-201ENST00000580374 94 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 AP005901.3-202ENST00000581653 237 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 MIR3180-3-201ENST00000584616 94 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PTPN9P43378 AP002414.4-201ENST00000589764 1148 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
PTPN9P43378 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.53■□□□□ 0.56
PTPN9P43378 AC233702.3-201ENST00000578656 1387 ntBASIC18.53■□□□□ 0.56
PTPN9P43378 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN9P43378 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.53■□□□□ 0.56
PTPN9P43378 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.52■□□□□ 0.56
PTPN9P43378 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PTPN9P43378 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN9P43378 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.52■□□□□ 0.56
PTPN9P43378 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 COX5BP2-201ENST00000392354 334 ntBASIC18.52■□□□□ 0.56
PTPN9P43378 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 AC005104.2-201ENST00000427818 678 ntBASIC18.52■□□□□ 0.56
PTPN9P43378 ATP5G2P1-201ENST00000433580 426 ntBASIC18.52■□□□□ 0.56
PTPN9P43378 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.52■□□□□ 0.56
PTPN9P43378 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 AC091607.1-201ENST00000490318 1060 ntBASIC18.52■□□□□ 0.56
PTPN9P43378 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN9P43378 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN9P43378 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN9P43378 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN9P43378 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN9P43378 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
PTPN9P43378 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
PTPN9P43378 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN9P43378 HLA-J-201ENST00000462773 1622 ntBASIC18.52■□□□□ 0.55
PTPN9P43378 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN9P43378 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.52■□□□□ 0.55
PTPN9P43378 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN9P43378 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
PTPN9P43378 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN9P43378 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN9P43378 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms