Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
USF1P22415 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.14■□□□□ 0.01
USF1P22415 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF1P22415 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.14■□□□□ 0.01
USF1P22415 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.14■□□□□ 0.01
USF1P22415 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.14■□□□□ 0.01
USF1P22415 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF1P22415 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
USF1P22415 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
USF1P22415 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 AC005332.8-201ENST00000622750 2735 ntBASIC15.13■□□□□ 0.01
USF1P22415 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 AL031284.1-201ENST00000419297 478 ntBASIC15.13■□□□□ 0.01
USF1P22415 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 AC132008.2-207ENST00000454517 770 ntBASIC15.13■□□□□ 0.01
USF1P22415 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.13■□□□□ 0.01
USF1P22415 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
USF1P22415 AC008608.2-201ENST00000606089 416 ntBASIC15.13■□□□□ 0.01
USF1P22415 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 AF228730.7-201ENST00000641842 219 ntBASIC15.13■□□□□ 0.01
USF1P22415 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
USF1P22415 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 IL9RP2-201ENST00000423948 1312 ntBASIC15.13■□□□□ 0.01
USF1P22415 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
USF1P22415 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.13■□□□□ 0.01
USF1P22415 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
USF1P22415 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.12■□□□□ 0.01
USF1P22415 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.12■□□□□ 0.01
USF1P22415 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.12■□□□□ 0.01
USF1P22415 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
USF1P22415 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
USF1P22415 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms