Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.78■□□□□ 0.92
PRPF40AO75400 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.78■□□□□ 0.92
PRPF40AO75400 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.78■□□□□ 0.92
PRPF40AO75400 AP003071.4-201ENST00000562276 1284 ntBASIC20.78■□□□□ 0.92
PRPF40AO75400 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.78■□□□□ 0.92
PRPF40AO75400 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 DGCR10-201ENST00000609839 495 ntBASIC20.78■□□□□ 0.92
PRPF40AO75400 REXO1L12P-201ENST00000622156 912 ntBASIC20.78■□□□□ 0.92
PRPF40AO75400 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.78■□□□□ 0.92
PRPF40AO75400 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
PRPF40AO75400 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.78■□□□□ 0.92
PRPF40AO75400 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
PRPF40AO75400 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PRPF40AO75400 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 AC106886.4-201ENST00000623557 2502 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 AC132938.6-201ENST00000623828 1655 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PRPF40AO75400 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
PRPF40AO75400 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 AC008894.3-201ENST00000624324 3103 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 KRT18P23-201ENST00000435622 1283 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 DUTP2-201ENST00000519164 463 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 BX088651.1-201ENST00000540551 451 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 AL355075.4-201ENST00000554988 638 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.77■□□□□ 0.92
PRPF40AO75400 SLC25A1P4-201ENST00000567977 778 ntBASIC20.77■□□□□ 0.92
PRPF40AO75400 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.77■□□□□ 0.92
PRPF40AO75400 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PRPF40AO75400 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
PRPF40AO75400 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PRPF40AO75400 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
PRPF40AO75400 HOXB1-202ENST00000577092 1414 ntBASIC20.77■□□□□ 0.91
PRPF40AO75400 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.77■□□□□ 0.91
PRPF40AO75400 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
PRPF40AO75400 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
PRPF40AO75400 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PRPF40AO75400 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
PRPF40AO75400 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.76■□□□□ 0.91
PRPF40AO75400 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.76■□□□□ 0.91
PRPF40AO75400 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.76■□□□□ 0.91
PRPF40AO75400 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.76■□□□□ 0.91
PRPF40AO75400 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.76■□□□□ 0.91
PRPF40AO75400 LINC00304-203ENST00000565008 1864 ntBASIC20.76■□□□□ 0.91
PRPF40AO75400 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.76■□□□□ 0.91
PRPF40AO75400 MFAP1P1-201ENST00000442257 1255 ntBASIC20.76■□□□□ 0.91
PRPF40AO75400 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.76■□□□□ 0.91
PRPF40AO75400 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.76■□□□□ 0.91
PRPF40AO75400 REXO1L10P-201ENST00000615707 1290 ntBASIC20.76■□□□□ 0.91
PRPF40AO75400 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.76■□□□□ 0.91
PRPF40AO75400 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PRPF40AO75400 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PRPF40AO75400 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PRPF40AO75400 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.75■□□□□ 0.91
PRPF40AO75400 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
PRPF40AO75400 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.75■□□□□ 0.91
PRPF40AO75400 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
PRPF40AO75400 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PRPF40AO75400 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PRPF40AO75400 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms