Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CCDC88BA6NC98 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 BCAR1-209ENST00000546196 1340 ntBASIC30.68■■■□□ 2.5
CCDC88BA6NC98 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 EFTUD1P1-204ENST00000560401 1798 ntBASIC30.68■■■□□ 2.5
CCDC88BA6NC98 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 AC091812.2-201ENST00000619081 385 ntBASIC30.68■■■□□ 2.5
CCDC88BA6NC98 AC092902.6-201ENST00000641783 218 ntBASIC30.68■■■□□ 2.5
CCDC88BA6NC98 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CCDC88BA6NC98 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 POR-209ENST00000439269 1858 ntTSL 2 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 LINC00982-205ENST00000420957 435 ntBASIC30.67■■■□□ 2.5
CCDC88BA6NC98 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 CD63-210ENST00000550776 870 ntTSL 5 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 AC093028.1-201ENST00000622998 982 ntBASIC30.67■■■□□ 2.5
CCDC88BA6NC98 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
CCDC88BA6NC98 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 FAM58CP-201ENST00000435741 640 ntBASIC30.66■■■□□ 2.5
CCDC88BA6NC98 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 RNF34-208ENST00000555076 593 ntTSL 3 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 BX276092.7-203ENST00000637198 1536 ntBASIC30.66■■■□□ 2.5
CCDC88BA6NC98 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
CCDC88BA6NC98 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 TSEN15P1-201ENST00000423257 515 ntBASIC30.65■■■□□ 2.5
CCDC88BA6NC98 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 AL513210.1-201ENST00000629608 234 ntBASIC30.65■■■□□ 2.5
CCDC88BA6NC98 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 AC097637.2-201ENST00000624096 1997 ntBASIC30.65■■■□□ 2.5
CCDC88BA6NC98 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC30.65■■■□□ 2.5
CCDC88BA6NC98 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CCDC88BA6NC98 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
CCDC88BA6NC98 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
CCDC88BA6NC98 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 AC106028.4-201ENST00000614509 607 ntBASIC30.63■■■□□ 2.49
CCDC88BA6NC98 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 CALY-203ENST00000368558 825 ntTSL 5 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 SPCS2P1-201ENST00000561636 679 ntBASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms