Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 AC087499.1-201ENST00000418141 1075 ntBASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC39Q9UFE4 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC39Q9UFE4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AC009947.2-201ENST00000444014 672 ntBASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 MIR3180-4-201ENST00000582223 153 ntBASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 AP001094.4-201ENST00000579008 2176 ntBASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CCDC39Q9UFE4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC39Q9UFE4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SDHAP2-201ENST00000455183 2001 ntBASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 AL121761.2-201ENST00000598007 1648 ntBASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC39Q9UFE4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms