Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 CROCCP5-201ENST00000436658 830 ntBASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 AC022517.1-201ENST00000592429 346 ntBASIC17.34■□□□□ 0.37
NDE1Q9NXR1 AC083880.1-201ENST00000608266 535 ntBASIC17.34■□□□□ 0.37
NDE1Q9NXR1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NDE1Q9NXR1 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.33■□□□□ 0.37
NDE1Q9NXR1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 AC006970.2-201ENST00000450065 779 ntBASIC17.33■□□□□ 0.36
NDE1Q9NXR1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 AC106886.4-201ENST00000623557 2502 ntBASIC17.33■□□□□ 0.36
NDE1Q9NXR1 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NDE1Q9NXR1 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
NDE1Q9NXR1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms