Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TRERF1Q96PN7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 AL031598.1-201ENST00000561511 1773 ntBASIC20.73■□□□□ 0.91
TRERF1Q96PN7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.73■□□□□ 0.91
TRERF1Q96PN7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 TP73-AS1-210ENST00000637775 1455 ntBASIC20.73■□□□□ 0.91
TRERF1Q96PN7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.73■□□□□ 0.91
TRERF1Q96PN7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AP000347.1-202ENST00000435868 847 ntBASIC20.72■□□□□ 0.91
TRERF1Q96PN7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 KRT18P65-201ENST00000439811 1286 ntBASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AC132008.2-207ENST00000454517 770 ntBASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AL662844.1-201ENST00000546340 181 ntBASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 GMCL1P1-201ENST00000463439 1581 ntBASIC20.72■□□□□ 0.91
TRERF1Q96PN7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRERF1Q96PN7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 AC139713.2-201ENST00000641328 2723 ntBASIC20.71■□□□□ 0.91
TRERF1Q96PN7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRERF1Q96PN7 AC126763.1-201ENST00000552015 2118 ntBASIC20.71■□□□□ 0.91
TRERF1Q96PN7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRERF1Q96PN7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRERF1Q96PN7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRERF1Q96PN7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
TRERF1Q96PN7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRERF1Q96PN7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms