Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTCHD1Q96NR3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AL845331.1-201ENST00000424978 1190 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 KRT17P6-201ENST00000453795 1220 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC112698.1-201ENST00000510299 916 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 DUTP2-201ENST00000519164 463 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC012615.1-201ENST00000565797 1299 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 CLEC4GP1-201ENST00000596555 870 ntBASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTCHD1Q96NR3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 AC091607.1-201ENST00000490318 1060 ntBASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTCHD1Q96NR3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 MINOS1P3-201ENST00000457048 203 ntBASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 PRELID1P1-202ENST00000567272 903 ntBASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AP005901.3-202ENST00000581653 237 ntBASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms