Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AC092597.1-201ENST00000487352 616 ntBASIC17.16■□□□□ 0.34
VMP1Q96GC9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AL136038.4-201ENST00000603606 1261 ntBASIC17.16■□□□□ 0.34
VMP1Q96GC9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 GNAS-203ENST00000306120 1878 ntBASIC17.16■□□□□ 0.34
VMP1Q96GC9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.16■□□□□ 0.34
VMP1Q96GC9 AC084018.2-201ENST00000613093 2607 ntBASIC17.16■□□□□ 0.34
VMP1Q96GC9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 VENTXP5-201ENST00000523979 775 ntBASIC17.15■□□□□ 0.34
VMP1Q96GC9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 AL136038.3-201ENST00000561909 1096 ntBASIC17.15■□□□□ 0.34
VMP1Q96GC9 AC091076.1-201ENST00000610741 619 ntBASIC17.15■□□□□ 0.34
VMP1Q96GC9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
VMP1Q96GC9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VMP1Q96GC9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
VMP1Q96GC9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 PVRIG2P-201ENST00000435460 978 ntBASIC17.14■□□□□ 0.33
VMP1Q96GC9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 FAM86EP-206ENST00000510506 987 ntBASIC17.14■□□□□ 0.33
VMP1Q96GC9 AC079602.3-201ENST00000623931 403 ntBASIC17.14■□□□□ 0.33
VMP1Q96GC9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 AL163051.1-201ENST00000569214 1512 ntBASIC17.14■□□□□ 0.33
VMP1Q96GC9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
VMP1Q96GC9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
VMP1Q96GC9 AL391807.1-203ENST00000604392 2365 ntBASIC17.14■□□□□ 0.33
VMP1Q96GC9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VMP1Q96GC9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VMP1Q96GC9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms