Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC23.27■■□□□ 1.32
RTF1Q92541 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.27■■□□□ 1.32
RTF1Q92541 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23.27■■□□□ 1.32
RTF1Q92541 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
RTF1Q92541 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTF1Q92541 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
RTF1Q92541 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.26■■□□□ 1.31
RTF1Q92541 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 AC009113.1-201ENST00000570267 2443 ntBASIC23.26■■□□□ 1.31
RTF1Q92541 RNPS1P1-201ENST00000507437 918 ntBASIC23.26■■□□□ 1.31
RTF1Q92541 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
RTF1Q92541 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC23.26■■□□□ 1.31
RTF1Q92541 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.26■■□□□ 1.31
RTF1Q92541 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC23.26■■□□□ 1.31
RTF1Q92541 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
RTF1Q92541 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC23.26■■□□□ 1.31
RTF1Q92541 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
RTF1Q92541 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 MADD-208ENST00000405573 1823 ntTSL 5 BASIC23.26■■□□□ 1.31
RTF1Q92541 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTF1Q92541 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 MED29-202ENST00000594368 1471 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.25■■□□□ 1.31
RTF1Q92541 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.25■■□□□ 1.31
RTF1Q92541 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.25■■□□□ 1.31
RTF1Q92541 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.25■■□□□ 1.31
RTF1Q92541 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.25■■□□□ 1.31
RTF1Q92541 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 AC116407.2-201ENST00000613639 860 ntBASIC23.25■■□□□ 1.31
RTF1Q92541 AC148477.8-201ENST00000624298 468 ntBASIC23.25■■□□□ 1.31
RTF1Q92541 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.25■■□□□ 1.31
RTF1Q92541 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 AP000867.4-201ENST00000641616 219 ntBASIC23.25■■□□□ 1.31
RTF1Q92541 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 AC100803.2-201ENST00000562459 1963 ntBASIC23.25■■□□□ 1.31
RTF1Q92541 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
RTF1Q92541 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.25■■□□□ 1.31
RTF1Q92541 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
RTF1Q92541 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 AL356309.3-201ENST00000624132 1934 ntBASIC23.24■■□□□ 1.31
RTF1Q92541 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.24■■□□□ 1.31
RTF1Q92541 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
RTF1Q92541 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
RTF1Q92541 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 COX5BP2-201ENST00000392354 334 ntBASIC23.24■■□□□ 1.31
RTF1Q92541 AL031284.1-201ENST00000419297 478 ntBASIC23.24■■□□□ 1.31
RTF1Q92541 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC23.24■■□□□ 1.31
RTF1Q92541 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.24■■□□□ 1.31
RTF1Q92541 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.24■■□□□ 1.31
RTF1Q92541 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.24■■□□□ 1.31
RTF1Q92541 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.24■■□□□ 1.31
RTF1Q92541 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
RTF1Q92541 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.24■■□□□ 1.31
RTF1Q92541 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms