Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 YBX2P1-201ENST00000394192 760 ntBASIC17.87■□□□□ 0.45
HMGB4Q8WW32 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 RPSAP43-201ENST00000402237 625 ntBASIC17.87■□□□□ 0.45
HMGB4Q8WW32 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 AC009947.1-201ENST00000444350 727 ntBASIC17.87■□□□□ 0.45
HMGB4Q8WW32 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB4Q8WW32 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AC096633.1-201ENST00000422446 749 ntBASIC17.86■□□□□ 0.45
HMGB4Q8WW32 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 DNAJB3-201ENST00000446806 729 ntBASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AL139424.1-201ENST00000607572 797 ntBASIC17.86■□□□□ 0.45
HMGB4Q8WW32 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 AC005593.1-201ENST00000624894 515 ntBASIC17.86■□□□□ 0.45
HMGB4Q8WW32 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB4Q8WW32 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 AC023274.1-201ENST00000418278 595 ntBASIC17.85■□□□□ 0.45
HMGB4Q8WW32 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 AC122714.2-201ENST00000502787 707 ntBASIC17.85■□□□□ 0.45
HMGB4Q8WW32 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 AC006557.2-201ENST00000592985 1240 ntBASIC17.85■□□□□ 0.45
HMGB4Q8WW32 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.85■□□□□ 0.45
HMGB4Q8WW32 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
HMGB4Q8WW32 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HMGB4Q8WW32 KRT8P47-201ENST00000604727 1398 ntBASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms