Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
USHBP1Q8N6Y0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
USHBP1Q8N6Y0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 AC004832.2-201ENST00000426397 482 ntBASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
USHBP1Q8N6Y0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 WIZP1-201ENST00000531444 2299 ntBASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AL353593.2-201ENST00000602529 1483 ntBASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AC004967.1-201ENST00000453589 447 ntBASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
USHBP1Q8N6Y0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AL020989.1-201ENST00000422979 469 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC103564.2-201ENST00000432853 1299 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC002347.1-201ENST00000569543 541 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 MIR3687-2-201ENST00000577708 61 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 MIR3687-1-201ENST00000614492 61 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC004706.3-202ENST00000621574 984 ntBASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
USHBP1Q8N6Y0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 AC135776.1-201ENST00000319817 2481 ntBASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC23.42■■□□□ 1.34
USHBP1Q8N6Y0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms