Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.9■■□□□ 1.1
USP48Q86UV5 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.9■■□□□ 1.1
USP48Q86UV5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 AC010327.4-202ENST00000591484 748 ntBASIC21.9■■□□□ 1.1
USP48Q86UV5 AL356488.2-201ENST00000602755 427 ntBASIC21.9■■□□□ 1.1
USP48Q86UV5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
USP48Q86UV5 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
USP48Q86UV5 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.9■■□□□ 1.1
USP48Q86UV5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.9■■□□□ 1.1
USP48Q86UV5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
USP48Q86UV5 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.89■■□□□ 1.1
USP48Q86UV5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.89■■□□□ 1.1
USP48Q86UV5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
USP48Q86UV5 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.89■■□□□ 1.1
USP48Q86UV5 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
USP48Q86UV5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
USP48Q86UV5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.1
USP48Q86UV5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.89■■□□□ 1.1
USP48Q86UV5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
USP48Q86UV5 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
USP48Q86UV5 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
USP48Q86UV5 ABALON-201ENST00000629058 1903 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 RPS2P28-201ENST00000314255 741 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
USP48Q86UV5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.89■■□□□ 1.09
USP48Q86UV5 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC21.89■■□□□ 1.09
USP48Q86UV5 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
USP48Q86UV5 AC098831.1-202ENST00000438821 336 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.89■■□□□ 1.09
USP48Q86UV5 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.89■■□□□ 1.09
USP48Q86UV5 AC140113.2-201ENST00000604370 208 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 AC027601.4-201ENST00000611259 610 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.89■■□□□ 1.09
USP48Q86UV5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.89■■□□□ 1.09
USP48Q86UV5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
USP48Q86UV5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.89■■□□□ 1.09
USP48Q86UV5 AC126763.1-201ENST00000552015 2118 ntBASIC21.89■■□□□ 1.09
USP48Q86UV5 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
USP48Q86UV5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
USP48Q86UV5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.88■■□□□ 1.09
USP48Q86UV5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.88■■□□□ 1.09
USP48Q86UV5 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
USP48Q86UV5 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.88■■□□□ 1.09
USP48Q86UV5 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.88■■□□□ 1.09
USP48Q86UV5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
USP48Q86UV5 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.88■■□□□ 1.09
USP48Q86UV5 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 AC067852.2-201ENST00000590513 2313 ntBASIC21.88■■□□□ 1.09
USP48Q86UV5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.88■■□□□ 1.09
USP48Q86UV5 MED16-201ENST00000269814 1199 ntTSL 5 BASIC21.88■■□□□ 1.09
USP48Q86UV5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.88■■□□□ 1.09
USP48Q86UV5 AC145285.3-201ENST00000564603 959 ntBASIC21.88■■□□□ 1.09
USP48Q86UV5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC21.88■■□□□ 1.09
USP48Q86UV5 AP001160.2-201ENST00000596071 487 ntBASIC21.88■■□□□ 1.09
USP48Q86UV5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
USP48Q86UV5 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
USP48Q86UV5 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
USP48Q86UV5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
USP48Q86UV5 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
USP48Q86UV5 RPSAP43-201ENST00000402237 625 ntBASIC21.87■■□□□ 1.09
USP48Q86UV5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.87■■□□□ 1.09
USP48Q86UV5 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 IGHV3-22-201ENST00000520721 359 ntBASIC21.87■■□□□ 1.09
USP48Q86UV5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.87■■□□□ 1.09
USP48Q86UV5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
USP48Q86UV5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
USP48Q86UV5 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.86■■□□□ 1.09
USP48Q86UV5 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.86■■□□□ 1.09
USP48Q86UV5 LTB4R2-202ENST00000528054 3092 ntBASIC21.86■■□□□ 1.09
USP48Q86UV5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.86■■□□□ 1.09
USP48Q86UV5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
USP48Q86UV5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 231.2 ms