Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 PP12613-201ENST00000424958 2230 ntBASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 AL355312.1-201ENST00000407115 2176 ntBASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 IGHGP-201ENST00000390555 1178 ntBASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ZNF549Q6P9A3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 AC009949.1-201ENST00000623048 1830 ntBASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 LINC01311-201ENST00000565162 1445 ntBASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 AP003733.1-201ENST00000491725 852 ntBASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ZNF549Q6P9A3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 DUX4L26-201ENST00000489078 1255 ntBASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 ZNF444P1-201ENST00000559497 298 ntBASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 AC083849.1-201ENST00000615227 514 ntBASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 AC009154.2-201ENST00000621177 724 ntBASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms