Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 IER3-202ENST00000376377 1350 ntBASIC19.32■□□□□ 0.68
KRT39Q6A163 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
KRT39Q6A163 AC005332.8-201ENST00000622750 2735 ntBASIC19.31■□□□□ 0.68
KRT39Q6A163 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
KRT39Q6A163 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
KRT39Q6A163 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
KRT39Q6A163 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.31■□□□□ 0.68
KRT39Q6A163 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.31■□□□□ 0.68
KRT39Q6A163 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.31■□□□□ 0.68
KRT39Q6A163 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.31■□□□□ 0.68
KRT39Q6A163 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 AL592071.1-201ENST00000611956 408 ntBASIC19.31■□□□□ 0.68
KRT39Q6A163 AC124864.1-201ENST00000623408 392 ntBASIC19.31■□□□□ 0.68
KRT39Q6A163 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.31■□□□□ 0.68
KRT39Q6A163 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.31■□□□□ 0.68
KRT39Q6A163 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
KRT39Q6A163 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.31■□□□□ 0.68
KRT39Q6A163 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
KRT39Q6A163 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.3■□□□□ 0.68
KRT39Q6A163 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
KRT39Q6A163 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
KRT39Q6A163 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.3■□□□□ 0.68
KRT39Q6A163 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 DDX43P3-201ENST00000441064 443 ntBASIC19.3■□□□□ 0.68
KRT39Q6A163 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.3■□□□□ 0.68
KRT39Q6A163 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.3■□□□□ 0.68
KRT39Q6A163 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.3■□□□□ 0.68
KRT39Q6A163 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.3■□□□□ 0.68
KRT39Q6A163 AC016734.2-201ENST00000624325 1377 ntBASIC19.3■□□□□ 0.68
KRT39Q6A163 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
KRT39Q6A163 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
KRT39Q6A163 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.29■□□□□ 0.68
KRT39Q6A163 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.29■□□□□ 0.68
KRT39Q6A163 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 ARMC10P1-201ENST00000313754 855 ntBASIC19.29■□□□□ 0.68
KRT39Q6A163 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.29■□□□□ 0.68
KRT39Q6A163 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
KRT39Q6A163 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.29■□□□□ 0.68
KRT39Q6A163 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
KRT39Q6A163 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
KRT39Q6A163 AP000550.4-202ENST00000639755 178 ntBASIC19.29■□□□□ 0.68
KRT39Q6A163 PCDHB18P-201ENST00000524813 2368 ntBASIC19.29■□□□□ 0.68
KRT39Q6A163 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
KRT39Q6A163 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.28■□□□□ 0.68
KRT39Q6A163 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.28■□□□□ 0.68
KRT39Q6A163 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
KRT39Q6A163 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms