Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 HNRNPDP1-201ENST00000439535 754 ntBASIC18.16■□□□□ 0.5
USP39Q53GS9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.16■□□□□ 0.5
USP39Q53GS9 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
USP39Q53GS9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.16■□□□□ 0.5
USP39Q53GS9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
USP39Q53GS9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
USP39Q53GS9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
USP39Q53GS9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.15■□□□□ 0.5
USP39Q53GS9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.15■□□□□ 0.5
USP39Q53GS9 AP001269.4-201ENST00000609611 512 ntBASIC18.15■□□□□ 0.5
USP39Q53GS9 AC009154.2-201ENST00000621177 724 ntBASIC18.15■□□□□ 0.5
USP39Q53GS9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.15■□□□□ 0.5
USP39Q53GS9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
USP39Q53GS9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
USP39Q53GS9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.14■□□□□ 0.5
USP39Q53GS9 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.14■□□□□ 0.5
USP39Q53GS9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
USP39Q53GS9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.14■□□□□ 0.5
USP39Q53GS9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
USP39Q53GS9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 INTS4P1-201ENST00000438455 1935 ntBASIC18.14■□□□□ 0.49
USP39Q53GS9 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.14■□□□□ 0.49
USP39Q53GS9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
USP39Q53GS9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.14■□□□□ 0.49
USP39Q53GS9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.14■□□□□ 0.49
USP39Q53GS9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
USP39Q53GS9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.13■□□□□ 0.49
USP39Q53GS9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
USP39Q53GS9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms