Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 YBX1P2-201ENST00000489612 999 ntBASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 AC113404.2-201ENST00000507884 177 ntBASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC40Q4G0X9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 AC005521.1-201ENST00000393351 872 ntBASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 KRT18P57-201ENST00000443599 1254 ntBASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC40Q4G0X9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 AC117947.1-201ENST00000427448 529 ntBASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC40Q4G0X9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 STARP1-201ENST00000397973 869 ntBASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms