Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
CX3CL1P78423 AC112907.2-201ENST00000448639 330 ntBASIC14.43□□□□□ -0.1
CX3CL1P78423 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.43□□□□□ -0.1
CX3CL1P78423 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.43□□□□□ -0.1
CX3CL1P78423 AC024563.2-201ENST00000603282 481 ntBASIC14.43□□□□□ -0.1
CX3CL1P78423 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.43□□□□□ -0.1
CX3CL1P78423 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CX3CL1P78423 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
CX3CL1P78423 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.42□□□□□ -0.1
CX3CL1P78423 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 HLA-F-220ENST00000434407 884 ntBASIC14.42□□□□□ -0.1
CX3CL1P78423 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC14.42□□□□□ -0.1
CX3CL1P78423 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CX3CL1P78423 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CX3CL1P78423 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CX3CL1P78423 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CX3CL1P78423 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 GNAS-203ENST00000306120 1878 ntBASIC14.42□□□□□ -0.1
CX3CL1P78423 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.42□□□□□ -0.1
CX3CL1P78423 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.42□□□□□ -0.1
CX3CL1P78423 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.41□□□□□ -0.1
CX3CL1P78423 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CX3CL1P78423 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CX3CL1P78423 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.41□□□□□ -0.1
CX3CL1P78423 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 HBZP1-201ENST00000354915 429 ntBASIC14.41□□□□□ -0.1
CX3CL1P78423 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.41□□□□□ -0.1
CX3CL1P78423 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 AL049597.2-201ENST00000565575 961 ntBASIC14.41□□□□□ -0.1
CX3CL1P78423 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.41□□□□□ -0.1
CX3CL1P78423 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CX3CL1P78423 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 AC141586.5-201ENST00000624546 2050 ntBASIC14.41□□□□□ -0.1
CX3CL1P78423 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
CX3CL1P78423 AC124067.4-201ENST00000519691 2379 ntBASIC14.41□□□□□ -0.1
CX3CL1P78423 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CX3CL1P78423 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CX3CL1P78423 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms