Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RHBDL3P58872 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RHBDL3P58872 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
RHBDL3P58872 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RHBDL3P58872 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.05■□□□□ 0.96
RHBDL3P58872 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.05■□□□□ 0.96
RHBDL3P58872 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RHBDL3P58872 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
RHBDL3P58872 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 AC120498.9-201ENST00000339021 3867 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
RHBDL3P58872 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.04■□□□□ 0.96
RHBDL3P58872 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.04■□□□□ 0.96
RHBDL3P58872 KRT18P13-201ENST00000400056 1290 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.04■□□□□ 0.96
RHBDL3P58872 COX10-202ENST00000429152 875 ntTSL 2 BASIC21.04■□□□□ 0.96
RHBDL3P58872 DDX43P3-201ENST00000441064 443 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 AC009947.1-201ENST00000444350 727 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.04■□□□□ 0.96
RHBDL3P58872 FAM197Y3-203ENST00000618346 717 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.04■□□□□ 0.96
RHBDL3P58872 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.04■□□□□ 0.96
RHBDL3P58872 AC009113.1-201ENST00000570267 2443 ntBASIC21.04■□□□□ 0.96
RHBDL3P58872 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.04■□□□□ 0.96
RHBDL3P58872 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RHBDL3P58872 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RHBDL3P58872 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 AC104581.1-202ENST00000635932 2618 ntBASIC21.03■□□□□ 0.96
RHBDL3P58872 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.03■□□□□ 0.96
RHBDL3P58872 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC21.03■□□□□ 0.96
RHBDL3P58872 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.03■□□□□ 0.96
RHBDL3P58872 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AC109462.3-201ENST00000573934 613 ntBASIC21.03■□□□□ 0.96
RHBDL3P58872 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.03■□□□□ 0.96
RHBDL3P58872 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.03■□□□□ 0.96
RHBDL3P58872 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.03■□□□□ 0.96
RHBDL3P58872 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.03■□□□□ 0.96
RHBDL3P58872 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.03■□□□□ 0.96
RHBDL3P58872 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.03■□□□□ 0.96
RHBDL3P58872 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RHBDL3P58872 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
RHBDL3P58872 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC21.02■□□□□ 0.96
RHBDL3P58872 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC21.02■□□□□ 0.96
RHBDL3P58872 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.02■□□□□ 0.96
RHBDL3P58872 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC21.02■□□□□ 0.96
RHBDL3P58872 AC006557.2-201ENST00000592985 1240 ntBASIC21.02■□□□□ 0.96
RHBDL3P58872 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.02■□□□□ 0.96
RHBDL3P58872 AL589182.2-201ENST00000619332 1049 ntBASIC21.02■□□□□ 0.96
RHBDL3P58872 AC004706.3-202ENST00000621574 984 ntBASIC21.02■□□□□ 0.96
RHBDL3P58872 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.02■□□□□ 0.96
RHBDL3P58872 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RHBDL3P58872 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.02■□□□□ 0.95
RHBDL3P58872 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RHBDL3P58872 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RHBDL3P58872 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.01■□□□□ 0.95
RHBDL3P58872 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms