Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.98■□□□□ 0.31
RORAP35398 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.98■□□□□ 0.31
RORAP35398 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RORAP35398 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.98■□□□□ 0.31
RORAP35398 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.98■□□□□ 0.31
RORAP35398 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
RORAP35398 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RORAP35398 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.97■□□□□ 0.31
RORAP35398 AP000347.1-202ENST00000435868 847 ntBASIC16.97■□□□□ 0.31
RORAP35398 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.97■□□□□ 0.31
RORAP35398 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.97■□□□□ 0.31
RORAP35398 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.97■□□□□ 0.31
RORAP35398 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.97■□□□□ 0.31
RORAP35398 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.97■□□□□ 0.31
RORAP35398 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.97■□□□□ 0.31
RORAP35398 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.97■□□□□ 0.31
RORAP35398 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RORAP35398 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RORAP35398 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RORAP35398 HLA-A-201ENST00000376802 1334 ntBASIC16.96■□□□□ 0.31
RORAP35398 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.31
RORAP35398 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.96■□□□□ 0.31
RORAP35398 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
RORAP35398 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
RORAP35398 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.96■□□□□ 0.31
RORAP35398 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
RORAP35398 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RORAP35398 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RORAP35398 AC104581.1-202ENST00000635932 2618 ntBASIC16.96■□□□□ 0.3
RORAP35398 AC009113.1-201ENST00000570267 2443 ntBASIC16.96■□□□□ 0.3
RORAP35398 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
RORAP35398 AC093010.1-201ENST00000473625 1624 ntBASIC16.96■□□□□ 0.3
RORAP35398 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.96■□□□□ 0.3
RORAP35398 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RORAP35398 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.96■□□□□ 0.3
RORAP35398 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
RORAP35398 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.95■□□□□ 0.3
RORAP35398 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
RORAP35398 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
RORAP35398 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.95■□□□□ 0.3
RORAP35398 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.95■□□□□ 0.3
RORAP35398 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.95■□□□□ 0.3
RORAP35398 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.95■□□□□ 0.3
RORAP35398 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.95■□□□□ 0.3
RORAP35398 AC064862.7-201ENST00000604520 867 ntBASIC16.95■□□□□ 0.3
RORAP35398 AC008608.2-201ENST00000606089 416 ntBASIC16.95■□□□□ 0.3
RORAP35398 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.95■□□□□ 0.3
RORAP35398 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RORAP35398 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms