Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SHMT2P34897 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SHMT2P34897 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 AC093677.2-201ENST00000600169 1863 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
SHMT2P34897 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SHMT2P34897 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 HCG4P8-203ENST00000443049 980 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 RN7SL606P-201ENST00000472779 293 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.5■□□□□ 0.39
SHMT2P34897 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 AC092329.2-201ENST00000598402 547 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 AC092119.3-201ENST00000612618 583 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 AC124864.1-201ENST00000623408 392 ntBASIC17.5■□□□□ 0.39
SHMT2P34897 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.5■□□□□ 0.39
SHMT2P34897 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.5■□□□□ 0.39
SHMT2P34897 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SHMT2P34897 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SHMT2P34897 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 DRAXINP1-201ENST00000437611 948 ntBASIC17.49■□□□□ 0.39
SHMT2P34897 VENTXP7-201ENST00000475503 772 ntBASIC17.49■□□□□ 0.39
SHMT2P34897 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.49■□□□□ 0.39
SHMT2P34897 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
SHMT2P34897 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.49■□□□□ 0.39
SHMT2P34897 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
SHMT2P34897 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.49■□□□□ 0.39
SHMT2P34897 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.49■□□□□ 0.39
SHMT2P34897 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHMT2P34897 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.48■□□□□ 0.39
SHMT2P34897 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
SHMT2P34897 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.48■□□□□ 0.39
SHMT2P34897 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.48■□□□□ 0.39
SHMT2P34897 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 TPSP2-201ENST00000561760 610 ntBASIC17.48■□□□□ 0.39
SHMT2P34897 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.48■□□□□ 0.39
SHMT2P34897 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.48■□□□□ 0.39
SHMT2P34897 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.48■□□□□ 0.39
SHMT2P34897 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.48■□□□□ 0.39
SHMT2P34897 AC135776.1-201ENST00000319817 2481 ntBASIC17.48■□□□□ 0.39
SHMT2P34897 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.48■□□□□ 0.39
SHMT2P34897 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHMT2P34897 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHMT2P34897 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHMT2P34897 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SHMT2P34897 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms