Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC22.35■■□□□ 1.17
COL5A3P25940 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 AC023141.5-201ENST00000458585 616 ntBASIC22.35■■□□□ 1.17
COL5A3P25940 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC22.35■■□□□ 1.17
COL5A3P25940 AL513210.1-201ENST00000629608 234 ntBASIC22.35■■□□□ 1.17
COL5A3P25940 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC22.35■■□□□ 1.17
COL5A3P25940 AC009949.1-201ENST00000623048 1830 ntBASIC22.35■■□□□ 1.17
COL5A3P25940 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC22.35■■□□□ 1.17
COL5A3P25940 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC22.35■■□□□ 1.17
COL5A3P25940 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
COL5A3P25940 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
COL5A3P25940 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 MIR770-201ENST00000390219 98 ntBASIC22.34■■□□□ 1.17
COL5A3P25940 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
COL5A3P25940 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC22.34■■□□□ 1.17
COL5A3P25940 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 METTL23-205ENST00000588302 925 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC22.34■■□□□ 1.17
COL5A3P25940 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.34■■□□□ 1.17
COL5A3P25940 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
COL5A3P25940 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC22.34■■□□□ 1.17
COL5A3P25940 AC004461.1-201ENST00000412461 403 ntBASIC22.34■■□□□ 1.17
COL5A3P25940 AC096734.2-201ENST00000562054 433 ntBASIC22.34■■□□□ 1.17
COL5A3P25940 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC22.34■■□□□ 1.17
COL5A3P25940 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC22.34■■□□□ 1.17
COL5A3P25940 AC005498.2-205ENST00000593218 784 ntBASIC22.34■■□□□ 1.17
COL5A3P25940 AC009093.7-201ENST00000623853 1223 ntBASIC22.34■■□□□ 1.17
COL5A3P25940 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL5A3P25940 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.33■■□□□ 1.17
COL5A3P25940 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
COL5A3P25940 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.33■■□□□ 1.17
COL5A3P25940 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC22.33■■□□□ 1.17
COL5A3P25940 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC22.33■■□□□ 1.17
COL5A3P25940 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.33■■□□□ 1.17
COL5A3P25940 AC109322.1-201ENST00000524499 1264 ntBASIC22.33■■□□□ 1.17
COL5A3P25940 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
COL5A3P25940 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL5A3P25940 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
COL5A3P25940 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
COL5A3P25940 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
COL5A3P25940 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL5A3P25940 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC22.32■■□□□ 1.16
COL5A3P25940 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC22.32■■□□□ 1.16
COL5A3P25940 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 WDR53-203ENST00000429115 683 ntTSL 2 BASIC22.32■■□□□ 1.16
COL5A3P25940 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL5A3P25940 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC22.31■■□□□ 1.16
COL5A3P25940 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 SYS1-203ENST00000414310 795 ntTSL 3 BASIC22.31■■□□□ 1.16
COL5A3P25940 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL5A3P25940 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
COL5A3P25940 IGHV3OR16-6-201ENST00000568775 360 ntBASIC22.31■■□□□ 1.16
COL5A3P25940 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC22.31■■□□□ 1.16
COL5A3P25940 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
COL5A3P25940 AL096865.1-201ENST00000606796 927 ntBASIC22.31■■□□□ 1.16
COL5A3P25940 MED16-214ENST00000617672 554 ntTSL 5 BASIC22.31■■□□□ 1.16
COL5A3P25940 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
COL5A3P25940 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms