Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 AC132938.6-201ENST00000623828 1655 ntBASIC19.65■□□□□ 0.74
COL6A1P12109 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A1P12109 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL6A1P12109 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.65■□□□□ 0.74
COL6A1P12109 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL6A1P12109 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL6A1P12109 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.64■□□□□ 0.74
COL6A1P12109 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.64■□□□□ 0.74
COL6A1P12109 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
COL6A1P12109 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL6A1P12109 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL6A1P12109 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 AC004461.1-201ENST00000412461 403 ntBASIC19.64■□□□□ 0.73
COL6A1P12109 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
COL6A1P12109 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.64■□□□□ 0.73
COL6A1P12109 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
COL6A1P12109 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.64■□□□□ 0.73
COL6A1P12109 AL353593.2-201ENST00000602529 1483 ntBASIC19.64■□□□□ 0.73
COL6A1P12109 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.64■□□□□ 0.73
COL6A1P12109 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A1P12109 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL6A1P12109 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.63■□□□□ 0.73
COL6A1P12109 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 AC148477.5-201ENST00000625164 1645 ntBASIC19.63■□□□□ 0.73
COL6A1P12109 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.63■□□□□ 0.73
COL6A1P12109 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
COL6A1P12109 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
COL6A1P12109 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.63■□□□□ 0.73
COL6A1P12109 AC074386.1-202ENST00000463561 864 ntBASIC19.63■□□□□ 0.73
COL6A1P12109 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.63■□□□□ 0.73
COL6A1P12109 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL6A1P12109 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.63■□□□□ 0.73
COL6A1P12109 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
COL6A1P12109 AC105339.1-204ENST00000636249 355 ntBASIC19.63■□□□□ 0.73
COL6A1P12109 AL805961.1-202ENST00000641562 540 ntBASIC19.63■□□□□ 0.73
COL6A1P12109 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL6A1P12109 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A1P12109 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
COL6A1P12109 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.62■□□□□ 0.73
COL6A1P12109 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.62■□□□□ 0.73
COL6A1P12109 MRPL20P1-201ENST00000400819 433 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.62■□□□□ 0.73
COL6A1P12109 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.62■□□□□ 0.73
COL6A1P12109 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.62■□□□□ 0.73
COL6A1P12109 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.62■□□□□ 0.73
COL6A1P12109 AC109322.1-201ENST00000524499 1264 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 AC190387.1-201ENST00000551683 408 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL6A1P12109 OR7E47P-204ENST00000575924 449 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 AC091812.2-201ENST00000619081 385 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
COL6A1P12109 AC092902.6-201ENST00000641783 218 ntBASIC19.62■□□□□ 0.73
COL6A1P12109 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL6A1P12109 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
COL6A1P12109 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
COL6A1P12109 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A1P12109 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL6A1P12109 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.61■□□□□ 0.73
COL6A1P12109 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL6A1P12109 AC132938.5-201ENST00000624980 1813 ntBASIC19.61■□□□□ 0.73
COL6A1P12109 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A1P12109 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.61■□□□□ 0.73
COL6A1P12109 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A1P12109 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.61■□□□□ 0.73
COL6A1P12109 AC025678.2-201ENST00000562061 970 ntBASIC19.61■□□□□ 0.73
COL6A1P12109 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.61■□□□□ 0.73
COL6A1P12109 AL499627.1-201ENST00000569373 2188 ntBASIC19.61■□□□□ 0.73
COL6A1P12109 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms