Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC026185.1-201ENST00000445748 174 ntBASIC18■□□□□ 0.47
VIMP08670 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18■□□□□ 0.47
VIMP08670 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18■□□□□ 0.47
VIMP08670 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
VIMP08670 AC060766.5-201ENST00000590539 871 ntBASIC18■□□□□ 0.47
VIMP08670 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18■□□□□ 0.47
VIMP08670 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VIMP08670 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VIMP08670 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18■□□□□ 0.47
VIMP08670 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VIMP08670 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VIMP08670 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18■□□□□ 0.47
VIMP08670 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 KRT8P50-201ENST00000562022 1438 ntBASIC17.99■□□□□ 0.47
VIMP08670 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VIMP08670 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.99■□□□□ 0.47
VIMP08670 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
VIMP08670 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.99■□□□□ 0.47
VIMP08670 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.99■□□□□ 0.47
VIMP08670 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.99■□□□□ 0.47
VIMP08670 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 FLJ38576-201ENST00000623820 2459 ntBASIC17.99■□□□□ 0.47
VIMP08670 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.99■□□□□ 0.47
VIMP08670 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.99■□□□□ 0.47
VIMP08670 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VIMP08670 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VIMP08670 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.98■□□□□ 0.47
VIMP08670 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.98■□□□□ 0.47
VIMP08670 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.98■□□□□ 0.47
VIMP08670 SDHAP2-201ENST00000455183 2001 ntBASIC17.98■□□□□ 0.47
VIMP08670 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
VIMP08670 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.98■□□□□ 0.47
VIMP08670 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.98■□□□□ 0.47
VIMP08670 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
VIMP08670 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 MIR564-202ENST00000385049 94 ntBASIC17.98■□□□□ 0.47
VIMP08670 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.98■□□□□ 0.47
VIMP08670 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.98■□□□□ 0.47
VIMP08670 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 AL050303.2-201ENST00000619798 666 ntBASIC17.98■□□□□ 0.47
VIMP08670 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VIMP08670 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
VIMP08670 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.97■□□□□ 0.47
VIMP08670 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.97■□□□□ 0.47
VIMP08670 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.97■□□□□ 0.47
VIMP08670 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.97■□□□□ 0.47
VIMP08670 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.97■□□□□ 0.47
VIMP08670 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.97■□□□□ 0.47
VIMP08670 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.97■□□□□ 0.47
VIMP08670 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VIMP08670 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms