Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.16■□□□□ 0.34
SEMA3DO95025 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.16■□□□□ 0.34
SEMA3DO95025 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 IGHGP-201ENST00000390555 1178 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.16■□□□□ 0.34
SEMA3DO95025 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.16■□□□□ 0.34
SEMA3DO95025 AC022616.7-201ENST00000525383 220 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.16■□□□□ 0.34
SEMA3DO95025 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.16■□□□□ 0.34
SEMA3DO95025 ZNF444P1-201ENST00000559497 298 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 RN7SL850P-201ENST00000579959 291 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
SEMA3DO95025 AC009154.2-201ENST00000621177 724 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.16■□□□□ 0.34
SEMA3DO95025 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SEMA3DO95025 AC134043.2-201ENST00000624206 2238 ntBASIC17.16■□□□□ 0.34
SEMA3DO95025 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SEMA3DO95025 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SEMA3DO95025 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.15■□□□□ 0.34
SEMA3DO95025 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.15■□□□□ 0.34
SEMA3DO95025 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
SEMA3DO95025 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.15■□□□□ 0.34
SEMA3DO95025 AP003733.1-201ENST00000491725 852 ntBASIC17.15■□□□□ 0.34
SEMA3DO95025 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.15■□□□□ 0.34
SEMA3DO95025 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.15■□□□□ 0.34
SEMA3DO95025 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.15■□□□□ 0.34
SEMA3DO95025 AC004263.2-201ENST00000617183 678 ntBASIC17.15■□□□□ 0.34
SEMA3DO95025 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.15■□□□□ 0.34
SEMA3DO95025 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
SEMA3DO95025 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.15■□□□□ 0.34
SEMA3DO95025 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.15■□□□□ 0.34
SEMA3DO95025 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SEMA3DO95025 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.15■□□□□ 0.34
SEMA3DO95025 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SEMA3DO95025 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
SEMA3DO95025 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.34
SEMA3DO95025 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.14■□□□□ 0.33
SEMA3DO95025 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 TMPOP1-202ENST00000424642 1267 ntBASIC17.14■□□□□ 0.33
SEMA3DO95025 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.14■□□□□ 0.33
SEMA3DO95025 DUX4L26-201ENST00000489078 1255 ntBASIC17.14■□□□□ 0.33
SEMA3DO95025 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.14■□□□□ 0.33
SEMA3DO95025 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.14■□□□□ 0.33
SEMA3DO95025 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SEMA3DO95025 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
SEMA3DO95025 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SEMA3DO95025 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SEMA3DO95025 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SEMA3DO95025 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SEMA3DO95025 LINC01311-201ENST00000565162 1445 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms