Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4BO75351 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4BO75351 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 MIR4674-201ENST00000582457 87 ntBASIC17.56■□□□□ 0.4
VPS4BO75351 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS4BO75351 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS4BO75351 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VPS4BO75351 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4BO75351 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4BO75351 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4BO75351 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS4BO75351 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS4BO75351 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VPS4BO75351 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS4BO75351 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS4BO75351 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS4BO75351 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
VPS4BO75351 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS4BO75351 AL645608.8-201ENST00000606034 2086 ntBASIC17.54■□□□□ 0.4
VPS4BO75351 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 LINC01126-201ENST00000623515 1646 ntBASIC17.54■□□□□ 0.4
VPS4BO75351 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.54■□□□□ 0.4
VPS4BO75351 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS4BO75351 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
VPS4BO75351 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 DUTP2-201ENST00000519164 463 ntBASIC17.53■□□□□ 0.4
VPS4BO75351 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS4BO75351 AL353719.1-201ENST00000566847 864 ntBASIC17.53■□□□□ 0.4
VPS4BO75351 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 AL023973.1-201ENST00000624619 620 ntBASIC17.53■□□□□ 0.4
VPS4BO75351 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS4BO75351 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VPS4BO75351 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms