Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FOSL1P1-201ENST00000511041 816 ntBASIC16.65■□□□□ 0.26
PRKNO60260 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.65■□□□□ 0.26
PRKNO60260 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 AC099336.1-202ENST00000602961 463 ntBASIC16.65■□□□□ 0.26
PRKNO60260 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PRKNO60260 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PRKNO60260 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PRKNO60260 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PRKNO60260 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PRKNO60260 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 AC138028.4-201ENST00000564984 1845 ntBASIC16.64■□□□□ 0.25
PRKNO60260 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PRKNO60260 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.64■□□□□ 0.25
PRKNO60260 NUS1P1-201ENST00000446295 882 ntBASIC16.64■□□□□ 0.25
PRKNO60260 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.64■□□□□ 0.25
PRKNO60260 AC112698.1-201ENST00000510299 916 ntBASIC16.64■□□□□ 0.25
PRKNO60260 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 AC138894.3-201ENST00000603787 634 ntBASIC16.64■□□□□ 0.25
PRKNO60260 AL732292.2-201ENST00000609649 430 ntBASIC16.64■□□□□ 0.25
PRKNO60260 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.64■□□□□ 0.25
PRKNO60260 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.64■□□□□ 0.25
PRKNO60260 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.64■□□□□ 0.25
PRKNO60260 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PRKNO60260 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PRKNO60260 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.63■□□□□ 0.25
PRKNO60260 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.63■□□□□ 0.25
PRKNO60260 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PRKNO60260 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 VENTXP7-201ENST00000475503 772 ntBASIC16.63■□□□□ 0.25
PRKNO60260 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.63■□□□□ 0.25
PRKNO60260 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.63■□□□□ 0.25
PRKNO60260 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.63■□□□□ 0.25
PRKNO60260 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.63■□□□□ 0.25
PRKNO60260 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PRKNO60260 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PRKNO60260 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PRKNO60260 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms