Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGN4O00479 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.64■□□□□ 0.25
HMGN4O00479 AC009154.2-201ENST00000621177 724 ntBASIC16.64■□□□□ 0.25
HMGN4O00479 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HMGN4O00479 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HMGN4O00479 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.64■□□□□ 0.25
HMGN4O00479 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGN4O00479 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HMGN4O00479 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 DDX43P3-201ENST00000441064 443 ntBASIC16.63■□□□□ 0.25
HMGN4O00479 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.63■□□□□ 0.25
HMGN4O00479 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGN4O00479 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGN4O00479 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
HMGN4O00479 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.63■□□□□ 0.25
HMGN4O00479 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HMGN4O00479 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.63■□□□□ 0.25
HMGN4O00479 AL023806.1-201ENST00000603994 1649 ntBASIC16.63■□□□□ 0.25
HMGN4O00479 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
HMGN4O00479 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGN4O00479 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
HMGN4O00479 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HMGN4O00479 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGN4O00479 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGN4O00479 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGN4O00479 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HMGN4O00479 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HMGN4O00479 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGN4O00479 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGN4O00479 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGN4O00479 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
HMGN4O00479 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGN4O00479 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms