Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC188H7C350 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC188H7C350 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC188H7C350 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CCDC188H7C350 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CCDC188H7C350 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 DDX43P3-201ENST00000441064 443 ntBASIC18.6■□□□□ 0.57
CCDC188H7C350 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC188H7C350 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC188H7C350 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC188H7C350 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC188H7C350 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC188H7C350 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC188H7C350 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC188H7C350 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC188H7C350 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC188H7C350 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC188H7C350 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC188H7C350 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC188H7C350 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 AC009949.1-201ENST00000623048 1830 ntBASIC18.58■□□□□ 0.57
CCDC188H7C350 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC188H7C350 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC188H7C350 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC188H7C350 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
CCDC188H7C350 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CCDC188H7C350 KRT18P29-201ENST00000397031 1267 ntBASIC18.58■□□□□ 0.56
CCDC188H7C350 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CCDC188H7C350 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC188H7C350 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC188H7C350 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC188H7C350 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC188H7C350 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC188H7C350 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CCDC188H7C350 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC188H7C350 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.58■□□□□ 0.56
CCDC188H7C350 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC188H7C350 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC188H7C350 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 AC092338.2-201ENST00000568827 1415 ntBASIC18.57■□□□□ 0.56
CCDC188H7C350 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC188H7C350 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC188H7C350 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC188H7C350 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC188H7C350 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC188H7C350 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC188H7C350 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms