Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC85CA6NKD9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 AL135744.1-201ENST00000565098 629 ntBASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC85CA6NKD9 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 DGCR5-201ENST00000399539 862 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 AC011495.1-201ENST00000498085 584 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 KRT18P41-201ENST00000518924 1277 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 AL391422.3-201ENST00000603791 2761 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 PI4KAP1-204ENST00000612579 1703 ntBASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC85CA6NKD9 AC010460.3-201ENST00000511359 1579 ntBASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 FAM185BP-201ENST00000443595 716 ntBASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 AC104794.3-201ENST00000566840 1248 ntBASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 AC099568.2-201ENST00000609194 695 ntBASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC85CA6NKD9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AL353779.1-201ENST00000434793 351 ntBASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 SPCS2P4-201ENST00000436160 681 ntBASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 API5-211ENST00000534695 560 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC85CA6NKD9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC85CA6NKD9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms