Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 U91328.1-201ENST00000437528 223 ntBASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 AC007064.4-201ENST00000637740 555 ntBASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC26.91■■□□□ 1.9
COL17A1Q9UMD9 PCDHAC2-203ENST00000615316 3011 ntBASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 KRT8P48-201ENST00000515599 1220 ntBASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 SLC25A39P2-201ENST00000537614 270 ntBASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 FO538757.1-201ENST00000623083 1397 ntBASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL17A1Q9UMD9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 ATP5G2P4-201ENST00000442175 420 ntBASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 KLF2P3-201ENST00000451977 1087 ntBASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC26.89■■□□□ 1.9
COL17A1Q9UMD9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL17A1Q9UMD9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL17A1Q9UMD9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL17A1Q9UMD9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL17A1Q9UMD9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL17A1Q9UMD9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 FAM58DP-201ENST00000428076 619 ntBASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 TIMM8BP1-201ENST00000452384 211 ntBASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 TBC1D3P5-201ENST00000579401 1545 ntBASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL17A1Q9UMD9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 PTCHD3P3-201ENST00000403073 906 ntBASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AC099522.2-201ENST00000607001 744 ntBASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 TUBB3P1-201ENST00000405796 1332 ntBASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 HNRNPA1P40-201ENST00000426371 1278 ntBASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL17A1Q9UMD9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 AC069335.1-201ENST00000489972 472 ntBASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 AP001059.3-201ENST00000619053 235 ntBASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 AL390754.1-201ENST00000619088 582 ntBASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL17A1Q9UMD9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL17A1Q9UMD9 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms