Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL25A1Q9BXS0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 AL024508.2-201ENST00000607749 1894 ntBASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 AC026740.1-201ENST00000607068 791 ntBASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL25A1Q9BXS0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 AKAP8P1-201ENST00000434743 1349 ntBASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL25A1Q9BXS0 FEM1AP4-201ENST00000443167 1987 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 FXNP2-201ENST00000411625 547 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 AC096633.1-201ENST00000422446 749 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 TTTY23B-201ENST00000442790 549 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 MPRIPP1-201ENST00000452433 1089 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 RARRES2P8-201ENST00000566335 367 ntBASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.91■□□□□ 0.46
COL25A1Q9BXS0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL25A1Q9BXS0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms