Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.71■■□□□ 1.07
RPAP1Q9BWH6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
RPAP1Q9BWH6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.7■■□□□ 1.07
RPAP1Q9BWH6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
RPAP1Q9BWH6 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 FLJ13224-201ENST00000313737 1514 ntBASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 AC064862.7-201ENST00000604520 867 ntBASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 AL773604.1-201ENST00000617417 272 ntBASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.7■■□□□ 1.06
RPAP1Q9BWH6 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 AC096582.2-201ENST00000510860 516 ntBASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.69■■□□□ 1.06
RPAP1Q9BWH6 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 KRT18P67-201ENST00000432816 1264 ntBASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 AC079776.4-201ENST00000511039 504 ntBASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 AP001005.1-201ENST00000571755 1248 ntBASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 AC005336.2-201ENST00000593183 939 ntBASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 AC006538.3-201ENST00000612495 578 ntBASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
RPAP1Q9BWH6 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms