Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 AC008556.1-201ENST00000610908 2040 ntBASIC18.39■□□□□ 0.53
SKA1Q96BD8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 AP002383.4-201ENST00000442518 975 ntBASIC18.38■□□□□ 0.53
SKA1Q96BD8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SKA1Q96BD8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.38■□□□□ 0.53
SKA1Q96BD8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 DRAXINP1-201ENST00000437611 948 ntBASIC18.37■□□□□ 0.53
SKA1Q96BD8 AP003733.1-201ENST00000491725 852 ntBASIC18.37■□□□□ 0.53
SKA1Q96BD8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA1Q96BD8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SKA1Q96BD8 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 PVRIG2P-201ENST00000435460 978 ntBASIC18.36■□□□□ 0.53
SKA1Q96BD8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 LINC00265-3P-201ENST00000447588 903 ntBASIC18.36■□□□□ 0.53
SKA1Q96BD8 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 AP000867.3-201ENST00000524675 377 ntBASIC18.36■□□□□ 0.53
SKA1Q96BD8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 HEIH-201ENST00000623091 1652 ntBASIC18.36■□□□□ 0.53
SKA1Q96BD8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA1Q96BD8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.36■□□□□ 0.53
SKA1Q96BD8 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA1Q96BD8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms