Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.1■□□□□ 0.97
BRF1Q92994 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.09■□□□□ 0.97
BRF1Q92994 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
BRF1Q92994 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BRF1Q92994 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
BRF1Q92994 AC009949.1-201ENST00000623048 1830 ntBASIC21.08■□□□□ 0.97
BRF1Q92994 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.08■□□□□ 0.97
BRF1Q92994 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.08■□□□□ 0.97
BRF1Q92994 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
BRF1Q92994 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BRF1Q92994 AL645929.1-201ENST00000420084 975 ntBASIC21.08■□□□□ 0.97
BRF1Q92994 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
BRF1Q92994 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.08■□□□□ 0.97
BRF1Q92994 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRF1Q92994 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRF1Q92994 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
BRF1Q92994 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
BRF1Q92994 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
BRF1Q92994 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
BRF1Q92994 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
BRF1Q92994 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRF1Q92994 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BRF1Q92994 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 AL031133.1-201ENST00000406807 723 ntBASIC21.07■□□□□ 0.96
BRF1Q92994 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.07■□□□□ 0.96
BRF1Q92994 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.07■□□□□ 0.96
BRF1Q92994 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.07■□□□□ 0.96
BRF1Q92994 NTF6B-201ENST00000591913 560 ntBASIC21.07■□□□□ 0.96
BRF1Q92994 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
BRF1Q92994 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.07■□□□□ 0.96
BRF1Q92994 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.07■□□□□ 0.96
BRF1Q92994 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BRF1Q92994 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.07■□□□□ 0.96
BRF1Q92994 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 LTB4R2-202ENST00000528054 3092 ntBASIC21.06■□□□□ 0.96
BRF1Q92994 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
BRF1Q92994 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.06■□□□□ 0.96
BRF1Q92994 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.06■□□□□ 0.96
BRF1Q92994 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.06■□□□□ 0.96
BRF1Q92994 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.06■□□□□ 0.96
BRF1Q92994 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.06■□□□□ 0.96
BRF1Q92994 AL355312.1-201ENST00000407115 2176 ntBASIC21.06■□□□□ 0.96
BRF1Q92994 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BRF1Q92994 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
BRF1Q92994 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
BRF1Q92994 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.05■□□□□ 0.96
BRF1Q92994 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.05■□□□□ 0.96
BRF1Q92994 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
BRF1Q92994 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BRF1Q92994 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.05■□□□□ 0.96
BRF1Q92994 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms