Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 CIRBP-230ENST00000591055 928 ntTSL 219.7■□□□□ 0.747e-15■□□□□ 9.7
DDX55Q8NHQ9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.6■□□□□ 0.735e-8■□□□□ 9.7
DDX55Q8NHQ9 CLTA-205ENST00000464497 1890 ntTSL 519.09■□□□□ 0.655e-8■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-205ENST00000463973 981 ntTSL 518.98■□□□□ 0.635e-8■□□□□ 9.7
DDX55Q8NHQ9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.33■□□□□ 0.525e-8■□□□□ 9.7
DDX55Q8NHQ9 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.525e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-220ENST00000559354 547 ntTSL 417.32■□□□□ 0.365e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-210ENST00000558215 581 ntTSL 417.1■□□□□ 0.335e-8■□□□□ 9.7
DDX55Q8NHQ9 ILVBL-210ENST00000534806 1033 ntTSL 517.07■□□□□ 0.323e-9■□□□□ 9.7
DDX55Q8NHQ9 MRFAP1-204ENST00000512914 1982 nt16.57■□□□□ 0.245e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-206ENST00000557809 568 ntTSL 416.18■□□□□ 0.185e-8■□□□□ 9.7
DDX55Q8NHQ9 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.94■□□□□ 0.145e-8■□□□□ 9.7
DDX55Q8NHQ9 PRPF8-207ENST00000573681 1044 ntTSL 214.61□□□□□ -0.075e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-230ENST00000560459 587 ntTSL 413.41□□□□□ -0.265e-8■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-203ENST00000454819 827 ntTSL 313.24□□□□□ -0.295e-8■□□□□ 9.7
DDX55Q8NHQ9 SPAG4-204ENST00000462896 368 ntTSL 313.24□□□□□ -0.295e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-209ENST00000557952 444 ntTSL 513.12□□□□□ -0.315e-8■□□□□ 9.7
DDX55Q8NHQ9 CIRBP-218ENST00000588344 370 ntTSL 310.8□□□□□ -0.687e-15■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-219ENST00000559288 575 ntTSL 410.49□□□□□ -0.735e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-211ENST00000558408 592 ntTSL 28.48□□□□□ -1.055e-8■□□□□ 9.7
DDX55Q8NHQ9 DCAF11-222ENST00000559396 300 ntTSL 34.75□□□□□ -1.655e-8■□□□□ 9.7
DDX55Q8NHQ9 BAG6-250ENST00000451898 993 ntTSL 323.18■■□□□ 1.32e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-248ENST00000441054 654 ntTSL 321.31■■□□□ 12e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-240ENST00000424480 1056 ntTSL 220.8■□□□□ 0.922e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-244ENST00000435080 1710 ntTSL 516.96■□□□□ 0.32e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-245ENST00000437771 2407 ntTSL 516.19■□□□□ 0.182e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-255ENST00000456622 859 ntTSL 515.11■□□□□ 0.012e-6■□□□□ 9.7
DDX55Q8NHQ9 BAG6-239ENST00000424176 747 ntTSL 314.96□□□□□ -0.012e-6■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.252e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.252e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.22e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.12e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.152e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-206ENST00000395499 2496 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.342e-21■□□□□ 9.7
DDX55Q8NHQ9 AGPAT1-208ENST00000490711 2448 ntTSL 210.47□□□□□ -0.732e-21■□□□□ 9.7
DDX55Q8NHQ9 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.923e-73■□□□□ 9.7
DDX55Q8NHQ9 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.63■□□□□ 0.252e-7■□□□□ 9.7
DDX55Q8NHQ9 TUBB-208ENST00000396389 2903 ntTSL 5 BASIC11.5□□□□□ -0.572e-7■□□□□ 9.7
DDX55Q8NHQ9 TUBB-207ENST00000396384 2823 ntTSL 3 BASIC11.17□□□□□ -0.622e-7■□□□□ 9.7
DDX55Q8NHQ9 TUBB-205ENST00000327892 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.732e-7■□□□□ 9.7
DDX55Q8NHQ9 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.254e-27■□□□□ 9.7
DDX55Q8NHQ9 ATP1A1-211ENST00000537345 3763 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.484e-27■□□□□ 9.7
DDX55Q8NHQ9 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC7.38□□□□□ -1.234e-27■□□□□ 9.7
DDX55Q8NHQ9 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.061e-22■□□□□ 9.7
DDX55Q8NHQ9 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.061e-22■□□□□ 9.7
DDX55Q8NHQ9 SPAG5-214ENST00000582076 719 ntTSL 317.49■□□□□ 0.394e-9■□□□□ 9.7
DDX55Q8NHQ9 SPAG5-211ENST00000580676 1023 ntTSL 513.64□□□□□ -0.234e-9■□□□□ 9.7
DDX55Q8NHQ9 SPAG5-215ENST00000582175 657 ntTSL 512.9□□□□□ -0.344e-9■□□□□ 9.7
DDX55Q8NHQ9 SPAG5-201ENST00000321765 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.364e-9■□□□□ 9.7
DDX55Q8NHQ9 SPAG5-208ENST00000580377 547 ntTSL 47.24□□□□□ -1.254e-9■□□□□ 9.7
DDX55Q8NHQ9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.61e-14■□□□□ 9.7
DDX55Q8NHQ9 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.41e-14■□□□□ 9.7
DDX55Q8NHQ9 QKI-204ENST00000361758 6085 ntTSL 525.09■■□□□ 1.612e-7■□□□□ 9.7
DDX55Q8NHQ9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.992e-7■□□□□ 9.7
DDX55Q8NHQ9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.34■■□□□ 1.491e-7■□□□□ 9.7
DDX55Q8NHQ9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.331e-7■□□□□ 9.7
DDX55Q8NHQ9 MAF1-206ENST00000534811 632 ntTSL 217.8■□□□□ 0.441e-7■□□□□ 9.7
DDX55Q8NHQ9 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.37□□□□□ -0.113e-22■□□□□ 9.7
DDX55Q8NHQ9 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.823e-22■□□□□ 9.7
DDX55Q8NHQ9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.083e-6■□□□□ 9.7
DDX55Q8NHQ9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.337e-23■□□□□ 9.7
DDX55Q8NHQ9 PDE3A-202ENST00000542675 685 ntTSL 315.03■□□□□ -07e-23■□□□□ 9.7
DDX55Q8NHQ9 STT3A-201ENST00000392708 4558 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.783e-6■□□□□ 9.7
DDX55Q8NHQ9 STT3A-205ENST00000525946 1383 ntTSL 27.52□□□□□ -1.213e-6■□□□□ 9.7
DDX55Q8NHQ9 STT3A-207ENST00000526364 617 ntTSL 36.38□□□□□ -1.393e-6■□□□□ 9.7
DDX55Q8NHQ9 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.442e-23■□□□□ 9.7
DDX55Q8NHQ9 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.142e-23■□□□□ 9.7
DDX55Q8NHQ9 TMBIM1-219ENST00000465082 2874 ntTSL 213.77□□□□□ -0.212e-23■□□□□ 9.7
DDX55Q8NHQ9 TMBIM1-214ENST00000444881 2936 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.482e-23■□□□□ 9.7
DDX55Q8NHQ9 VEGFA-211ENST00000476772 1683 ntTSL 1 (best)33.17■■■□□ 2.93e-6■□□□□ 9.7
DDX55Q8NHQ9 CTSD-209ENST00000637158 1200 ntTSL 522.91■■□□□ 1.261e-12■□□□□ 9.7
DDX55Q8NHQ9 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.171e-10■□□□□ 9.7
DDX55Q8NHQ9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.831e-10■□□□□ 9.7
DDX55Q8NHQ9 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC15.09■□□□□ 0.011e-10■□□□□ 9.7
DDX55Q8NHQ9 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.281e-17■□□□□ 9.7
DDX55Q8NHQ9 VPS25-203ENST00000589520 639 ntTSL 311.49□□□□□ -0.571e-17■□□□□ 9.7
DDX55Q8NHQ9 EPS8L2-211ENST00000527832 1597 ntTSL 225.46■■□□□ 1.671e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-227ENST00000534449 491 ntTSL 325.03■■□□□ 1.61e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-228ENST00000534679 750 ntTSL 223.23■■□□□ 1.311e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-220ENST00000531393 2304 ntTSL 1 (best)21.14■□□□□ 0.971e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-204ENST00000524973 403 ntTSL 220.65■□□□□ 0.91e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-212ENST00000528770 2233 ntTSL 218.62■□□□□ 0.571e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.251e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.241e-20■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.161e-20■□□□□ 9.6
DDX55Q8NHQ9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.038e-11■□□□□ 9.6
DDX55Q8NHQ9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.18■□□□□ 0.025e-14■□□□□ 9.6
DDX55Q8NHQ9 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.235e-14■□□□□ 9.6
DDX55Q8NHQ9 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.235e-14■□□□□ 9.6
DDX55Q8NHQ9 EPS8L2-208ENST00000526909 3844 ntTSL 512.79□□□□□ -0.361e-20■□□□□ 9.6
DDX55Q8NHQ9 P4HA1-202ENST00000307116 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.425e-14■□□□□ 9.6
DDX55Q8NHQ9 P4HA1-203ENST00000373008 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.425e-14■□□□□ 9.6
DDX55Q8NHQ9 MED4-204ENST00000495013 460 ntTSL 33.86□□□□□ -1.798e-11■□□□□ 9.6
DDX55Q8NHQ9 ERBB3-219ENST00000551242 2755 ntTSL 1 (best)12.83□□□□□ -0.366e-7■□□□□ 9.6
DDX55Q8NHQ9 ERBB3-217ENST00000551085 4382 ntTSL 212.55□□□□□ -0.46e-7■□□□□ 9.6
DDX55Q8NHQ9 ERBB3-214ENST00000550070 2729 ntTSL 1 (best)10.53□□□□□ -0.726e-7■□□□□ 9.6
DDX55Q8NHQ9 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC10.28□□□□□ -0.766e-7■□□□□ 9.6
DDX55Q8NHQ9 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC8.32□□□□□ -1.086e-7■□□□□ 9.6
DDX55Q8NHQ9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.668e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-208ENST00000481121 1543 ntTSL 225.28■■□□□ 1.648e-8■□□□□ 9.6
Retrieved 100 of 15,504 protein–RNA pairs in 92.9 ms