Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC091607.1-201ENST00000490318 1060 ntBASIC18.36■□□□□ 0.53
RTL3Q8N8U3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AP005901.3-202ENST00000581653 237 ntBASIC18.36■□□□□ 0.53
RTL3Q8N8U3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AC005336.2-201ENST00000593183 939 ntBASIC18.36■□□□□ 0.53
RTL3Q8N8U3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AC092329.2-201ENST00000598402 547 ntBASIC18.36■□□□□ 0.53
RTL3Q8N8U3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AC116407.2-201ENST00000613639 860 ntBASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.36■□□□□ 0.53
RTL3Q8N8U3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 Z69720.1-201ENST00000601483 472 ntBASIC18.35■□□□□ 0.53
RTL3Q8N8U3 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 NOC2LP2-201ENST00000407594 1944 ntBASIC18.35■□□□□ 0.53
RTL3Q8N8U3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
RTL3Q8N8U3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RTL3Q8N8U3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 AC009949.1-201ENST00000623048 1830 ntBASIC18.33■□□□□ 0.53
RTL3Q8N8U3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 AC018470.1-201ENST00000624790 3129 ntBASIC18.33■□□□□ 0.53
RTL3Q8N8U3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.33■□□□□ 0.53
RTL3Q8N8U3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTL3Q8N8U3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.33■□□□□ 0.52
RTL3Q8N8U3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTL3Q8N8U3 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTL3Q8N8U3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.33■□□□□ 0.52
RTL3Q8N8U3 AC096633.1-201ENST00000422446 749 ntBASIC18.33■□□□□ 0.52
RTL3Q8N8U3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms