Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC28AQ8IWP9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 KRT18P11-201ENST00000435214 1283 ntBASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 KRT8P20-201ENST00000423953 1409 ntBASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 CICP14-201ENST00000629111 2732 ntBASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC28AQ8IWP9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CCDC28AQ8IWP9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 FLJ13224-201ENST00000313737 1514 ntBASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 AC016769.1-201ENST00000409132 1010 ntBASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 AC006449.5-201ENST00000610658 2098 ntBASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CCDC28AQ8IWP9 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms