Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC23.67■■□□□ 1.38
USP54Q70EL1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USP54Q70EL1 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC23.67■■□□□ 1.38
USP54Q70EL1 AC211476.1-201ENST00000503899 468 ntBASIC23.67■■□□□ 1.38
USP54Q70EL1 OR7E47P-204ENST00000575924 449 ntBASIC23.67■■□□□ 1.38
USP54Q70EL1 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.67■■□□□ 1.38
USP54Q70EL1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
USP54Q70EL1 WIZP1-201ENST00000531444 2299 ntBASIC23.66■■□□□ 1.38
USP54Q70EL1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
USP54Q70EL1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.66■■□□□ 1.38
USP54Q70EL1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USP54Q70EL1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USP54Q70EL1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.66■■□□□ 1.38
USP54Q70EL1 METTL21AP1-201ENST00000438852 635 ntBASIC23.66■■□□□ 1.38
USP54Q70EL1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
USP54Q70EL1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.66■■□□□ 1.38
USP54Q70EL1 MIR3687-2-201ENST00000577708 61 ntBASIC23.66■■□□□ 1.38
USP54Q70EL1 MIR3687-1-201ENST00000614492 61 ntBASIC23.66■■□□□ 1.38
USP54Q70EL1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP54Q70EL1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP54Q70EL1 AL590787.1-201ENST00000568856 1315 ntBASIC23.65■■□□□ 1.38
USP54Q70EL1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP54Q70EL1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP54Q70EL1 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
USP54Q70EL1 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC23.65■■□□□ 1.38
USP54Q70EL1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP54Q70EL1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.65■■□□□ 1.38
USP54Q70EL1 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP54Q70EL1 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.65■■□□□ 1.38
USP54Q70EL1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.65■■□□□ 1.38
USP54Q70EL1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC23.65■■□□□ 1.38
USP54Q70EL1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP54Q70EL1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
USP54Q70EL1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP54Q70EL1 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP54Q70EL1 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP54Q70EL1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
USP54Q70EL1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC23.64■■□□□ 1.38
USP54Q70EL1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC23.64■■□□□ 1.38
USP54Q70EL1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC23.64■■□□□ 1.38
USP54Q70EL1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC23.64■■□□□ 1.38
USP54Q70EL1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.38
USP54Q70EL1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP54Q70EL1 PC-214ENST00000628663 1470 ntTSL 5 BASIC23.64■■□□□ 1.38
USP54Q70EL1 ELL2P1-201ENST00000413990 1906 ntBASIC23.64■■□□□ 1.37
USP54Q70EL1 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP54Q70EL1 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC23.64■■□□□ 1.37
USP54Q70EL1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC23.64■■□□□ 1.37
USP54Q70EL1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC23.64■■□□□ 1.37
USP54Q70EL1 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC23.64■■□□□ 1.37
USP54Q70EL1 CD63-210ENST00000550776 870 ntTSL 5 BASIC23.64■■□□□ 1.37
USP54Q70EL1 AL355385.1-201ENST00000606123 409 ntBASIC23.64■■□□□ 1.37
USP54Q70EL1 AL078644.1-201ENST00000609881 752 ntBASIC23.64■■□□□ 1.37
USP54Q70EL1 C20orf181-201ENST00000623918 480 ntBASIC23.64■■□□□ 1.37
USP54Q70EL1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP54Q70EL1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC23.63■■□□□ 1.37
USP54Q70EL1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.63■■□□□ 1.37
USP54Q70EL1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC23.63■■□□□ 1.37
USP54Q70EL1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP54Q70EL1 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP54Q70EL1 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.63■■□□□ 1.37
USP54Q70EL1 ATP6V0CP3-201ENST00000417255 467 ntBASIC23.63■■□□□ 1.37
USP54Q70EL1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC23.63■■□□□ 1.37
USP54Q70EL1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP54Q70EL1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
USP54Q70EL1 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP54Q70EL1 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
USP54Q70EL1 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP54Q70EL1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP54Q70EL1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.62■■□□□ 1.37
USP54Q70EL1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP54Q70EL1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP54Q70EL1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC23.62■■□□□ 1.37
USP54Q70EL1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP54Q70EL1 AC116407.2-201ENST00000613639 860 ntBASIC23.62■■□□□ 1.37
USP54Q70EL1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP54Q70EL1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP54Q70EL1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC23.62■■□□□ 1.37
USP54Q70EL1 BX323043.1-201ENST00000641006 1765 ntBASIC23.62■■□□□ 1.37
USP54Q70EL1 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC23.62■■□□□ 1.37
USP54Q70EL1 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
USP54Q70EL1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms